RNA-binding protein HuR regulates expression of ABCA1
Cristina M Ramirez, Chin-Sheng Lin, Kotb Abdelmohsen, Leigh Goedeke,
Je-Hyun Yoon, Julio Madrigal-Matute, Jose L Martin-Ventura, Dat T Vo,
Philip J Uren , Luiz O Penalva, Myriam Gorospe,
Carlos Fernandez-Hernando
2014 Journal of Lipid Research
[PDF][Publisher site]
Genomic Analyses Reveal Broad Impact of miR-137 on Genes Associated
with Malignant Transformation and Neuronal Differentiation in
Glioblastoma Cells
Saleh Tamim, Dat T Vo, Philip J Uren* , Mei Qiao,
Eckart Bindewald, Wojciech K Kasprzak, Bruce A Shapiro,
Helder I Nakaya, Suzanne C Burns, Patricia R Araujo,
Ichiro Nakano, Agnes J Radek, Scott Kuersten, Andrew D Smith,
Luiz OF Penalva
2014 PloS one
[PDF][Publisher site]
WTAP is a Novel Oncogenic Protein in Acute Myeloid Leukemia
H Bansal, Q Yihua, SP Iyer, S Ganapathy, D Proia, LO Penalva,
PJ Uren , U Suresh, JS Carew, AB Karnad,
S Weitman, GE Tomlinson, MK Rao, SM Kornblau, S Bansal
2014 Leukemia
[PDF][Publisher site]
Molecular hierarchy of mammary differentiation yields refined markers
of mammary stem cells
Camila O dos Santos, Clare Rebbeck, Elena Rozhkova, Amy Valentine,
Abigail Samuels, Lolahon R Kadiri, Pavel Osten, Elena Y Harris,
Philip J Uren, Andrew D Smith, Gregory J Hannon
2013 Proceedings of the National Academy of Sciences 110 (18)
[PDF][Publisher site]
Site identification in high-throughput RNA-protein interaction
data
Philip J Uren* , Emad Bahrami-Samani,
Suzanne C Burns, Mei Qiao, Fedor V Karginov, Emily Hodges,
Gregory J Hannon, Jeremy R Sanford, Luiz OF Penalva,
Andrew D Smith
2012 Bioinformatics 28 (23)
[PDF][Publisher site]
The RNA-binding protein Musashi1 affects medulloblastoma growth via
a network of cancer-related genes and is an indicator of poor
prognosis
Dat T Vo, Dharmalingam Subramaniam, Marc Remke, Tarea L Burton,
Philip J Uren, Jonathan A Gelfond,
Raquel de Sousa Abreu, Suzanne C Burns, Mei Qiao, Uthra Suresh,
Andrey Korshunov, Adrian M Dubuc, Paul A Northcott, Andrew D Smith,
Stefan M Pfister, Michael D Taylor, Sarath C Janga, Shrikant Anant,
Christine Vogel, Luiz OF Penalva
2012 The American journal of pathology 181 (5) 1762-1772
[PDF][Publisher site]
Genomic analyses of the RNA-binding protein Hu antigen R (HuR)
identify a complex network of target genes and novel characteristics
of its binding sites
Philip J Uren*, Suzanne C Burns, Jianhua Ruan,
Kusum K Singh, Andrew D Smith, Luiz OF Penalva
2011 Journal of Biological Chemistry 286 (43) 37063-37066
[PDF][Publisher site]
Directional DNA methylation changes and complex intermediate
states accompany lineage specificity in the adult hematopoietic
compartment
Emily Hodges, Antoine Molaro, Camila O Dos Santos, Pramod Thekkat,
Qiang Song, Philip J Uren, Jin Park, Jason Butler,
Shahin Rafii, W Richard McCombie, Andrew D Smith,
Gregory J Hannon
2011 Molecular cell 44 (1) 17-28
[PDF][Publisher site]
Improving promoter prediction using multiple instance learning
Philip J Uren*, R Mike Cameron-Jones,
Arthur HJ Sale
2008 AI 2008: Advances in Artificial Intelligence 289-299
[PDF][Publisher site]
MAUSA: using simulated annealing for guide tree construction in
multiple sequence alignment
Philip J Uren*, R Mike Cameron-Jones,
Arthur HJ Sale
2007 AI 2007: Advances in Artificial Intelligence 599-608
[PDF][Publisher site]
Promoter prediction using physico-chemical properties of DNA
Philip Uren*, R Michael Cameron-Jones, Arthur Sale
2006 Computational Life Sciences II 21-31
[PDF][Publisher site]
* indicates first or co-first authorship
I have acted as a reviewer for the follwoing journals, conferences, and meetings: